Scientists discover protist with unusual genetic code

Researchers at the Earlham Institute have identified a previously unknown protist species that reassigns two genetic stop codons to code for amino acids instead, marking a rare departure from the standard rules of life.

The organism, named Oligohymenophorea sp. PL0344, was collected from a freshwater pond at Oxford University Parks during a routine test of a single-cell DNA sequencing method. Dr. Jamie McGowan, a postdoctoral scientist leading the work, described the find as pure chance that revealed how little is known about protist genetics. In this ciliate, the codons TAA and TAG no longer signal the end of a gene but instead specify lysine and glutamic acid, respectively, while only TGA functions as a stop signal.

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Photorealistic depiction of DHX29 protein selectively silencing inefficient mRNA codons in a human cell, illustrating new gene expression research.
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Study identifies DHX29 as a key factor linking codon choice to selective silencing of inefficient genetic messages in human cells

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Researchers at Kyoto University and RIKEN report that human cells can detect “non-optimal” synonymous codons—alternative three-letter genetic instructions that encode the same amino acid but are translated less efficiently—and selectively suppress the corresponding mRNAs. In experiments described in Science, the team identifies the RNA-binding protein DHX29 as a central component of this codon-dependent control of gene expression.

Researchers at the University of California, Berkeley have identified a methane-producing archaeon that interprets a standard stop codon in two ways, challenging a core principle of biology. The microbe, Methanosarcina acetivorans, sometimes adds an amino acid called pyrrolysine instead of halting protein synthesis. This flexibility may aid in metabolizing compounds linked to human health.

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Researchers have discovered that DNA in newly fertilized eggs forms a structured 3D scaffold before the genome activates, challenging long-held assumptions. Using a new technique called Pico-C, scientists mapped this organization in fruit fly embryos. A related study shows that disrupting this structure in human cells triggers an immune response as if under viral attack.

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